Stem-loop cin-mir-4016-1

Accession

MI0015563

Description

Ciona intestinalis cin-mir-4016-1 precursor miRNA

Sequence

18 reads, 6 reads per million, 2 experiments

ucaaacuuauuuucaugauuauagaagagaaaugauuauaggaagagaccuucugucaguuuuuUGUUCUGUGAUCUUAAAGG
................((((((((((.(((((((((...(((......)))...))))..))))).)))))))))).......

Structure

ucaaacuuauuuucau          g     --    uau   aa 
                gauuauagaa agaaa  ugau   agg  g
                |||||||||| |||||  ||||   |||   
                CUAGUGUCUU Uuuuu  acug   ucc  a
---------GGAAAUU          G     ug    ucu   ag 

Annotation confidence Not enough data

Genome context

scaffold_3782: 881-963 [+]

Mature cin-miR-4016

• Accession: MIMAT0016522
• Description: Ciona intestinalis cin-miR-4016 mature miRNA
• Sequence: 65 - UGUUCUGUGAUCUUAAAGG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39