miRBase entry: cin-mir-4023

Stem-loop cin-mir-4023


Accession
MI0015574
Description
Ciona intestinalis cin-mir-4023 precursor miRNA


Sequence

guuuguuuguuuuuuuacauccaaguuacaaauuacUAAGUUGUGUAAAUUCUAAC
..(((..(((......)))..)))((((.((.((((........)))).)).))))

Structure
guuuguuuguuuuuuuacauccaa    c  a    UAA 
                        guua aa uuac   G
                        |||| || ||||    
                        CAAU UU AAUG   U
------------------------    C  A    UGU 


Annotation confidence Not enough data
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Genome context
2q: 1011810-1011865 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4023
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4023-3p

Accession MIMAT0016538
Description Ciona intestinalis cin-miR-4023-3p mature miRNA
Sequence 37 - UAAGUUGUGUAAAUUCUAAC - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39