Stem-loop cin-mir-4024

Accession

MI0015575

Description

Ciona intestinalis cin-mir-4024 precursor miRNA

Sequence

4 reads, 2 reads per million, 1 experiments

UUUGUAGGAUGAAAAGGUGaauacauagcaacaugcaccaauauuaaauuuauauUUUCAUCUUUUGAUCCUAUG
...(((((((.((((((((((......(((...)))...(((((.......))))))))))))))).))))))).

Structure

UUU       G          uacauagcaacaugcacc     ua 
   GUAGGAU AAAAGGUGaa                  aauau  a
   ||||||| ||||||||||                  |||||  a
   UAUCCUA UUUUCUACUU                  Uuaua  u
--G       G          ------------------     uu 

Annotation confidence Not enough data

Genome context

4q: 3219604-3219678 [-]

Mature cin-miR-4024-5p

• Accession: MIMAT0016539
• Description: Ciona intestinalis cin-miR-4024-5p mature miRNA
• Sequence: 1 - UUUGUAGGAUGAAAAGGUG - 19
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4024-3p

• Accession: MIMAT0016540
• Description: Ciona intestinalis cin-miR-4024-3p mature miRNA
• Sequence: 56 - UUUCAUCUUUUGAUCCUAUG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39