miRBase entry: cin-mir-4030

Stem-loop cin-mir-4030


Accession
MI0015581
Description
Ciona intestinalis cin-mir-4030 precursor miRNA


Sequence

66141 reads, 22680.0 reads per million, 9 experiments
AAAGUGCAACUUUGAUAGUGUguaacucuccaCGCUAUCAGAUGUGCUCUUA
.(((.(((..((((((((((((........))))))))))))..))).))).

Structure
A   U   AC            uaa 
 AAG GCA  UUUGAUAGUGUg   c
 ||| |||  ||||||||||||    
 UUC CGU  AGACUAUCGCac   u
A   U   GU            cuc 


Annotation confidence High
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Genome context
ref|NC_020168.1|: 4477483-4477534 [-]

Database links

Mature cin-miR-4030-5p

Accession MIMAT0016549
Description Ciona intestinalis cin-miR-4030-5p mature miRNA
Sequence 1 - AAAGUGCAACUUUGAUAGUGU - 21
Evidence experimental
Illumina [1]

Mature cin-miR-4030-3p

Accession MIMAT0016550
Description Ciona intestinalis cin-miR-4030-3p mature miRNA
Sequence 33 - CGCUAUCAGAUGUGCUCUUA - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39