Stem-loop cin-mir-4034

Accession

MI0015585

Description

Ciona intestinalis cin-mir-4034 precursor miRNA

Sequence

23993 reads, 8777 reads per million, 2 experiments

GCACAGUGCUCUAGGAAAGUaaagcucacuucguaCUUUUCUCUGGCACUGCGAG
.(.(((((((..((((((((((((....)))..)))))))))..))))))).)..

Structure

-G A       CU         --   c 
  C CAGUGCU  AGGAAAGUa  aag u
  | |||||||  |||||||||  |||  
  G GUCACGG  UCUUUUCau  uuc c
GA C       UC         gc   a 

Annotation confidence Not enough data

Genome context

14q: 1335663-1335717 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-4034

Mature cin-miR-4034-5p

• Accession: MIMAT0016557
• Description: Ciona intestinalis cin-miR-4034-5p mature miRNA
• Sequence: 1 - GCACAGUGCUCUAGGAAAGU - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4034-3p

• Accession: MIMAT0016558
• Description: Ciona intestinalis cin-miR-4034-3p mature miRNA
• Sequence: 36 - CUUUUCUCUGGCACUGCGAG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39