Stem-loop cin-mir-4034

Accession

MI0015585

Description

Ciona intestinalis cin-mir-4034 precursor miRNA

Literature search

1 open access papers mention cin-mir-4034
(1 sentences)

Sequence

271825 reads, 101892.0 reads per million, 9 experiments

GCACAGUGCUCUAGGAAAGUAaagcucacuucguaCUUUUCUCUGGCACUGCGAG
.(.(((((((..((((((((((((....)))..)))))))))..))))))).)..

Structure

-G A       CU         --   c 
  C CAGUGCU  AGGAAAGUA  aag u
  | |||||||  |||||||||  |||  
  G GUCACGG  UCUUUUCau  uuc c
GA C       UC         gc   a 

Annotation confidence High

Genome context

ref|NC_020179.1|: 3281765-3281819 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-4034

Mature cin-miR-4034-5p

• Accession: MIMAT0016557
• Description: Ciona intestinalis cin-miR-4034-5p mature miRNA
• Sequence: 1 - GCACAGUGCUCUAGGAAAGUA - 21
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4034-3p

• Accession: MIMAT0016558
• Description: Ciona intestinalis cin-miR-4034-3p mature miRNA
• Sequence: 36 - CUUUUCUCUGGCACUGCGAG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39