Stem-loop cin-mir-4037

Accession

MI0015588

Description

Ciona intestinalis cin-mir-4037 precursor miRNA

Literature search

1 open access papers mention cin-mir-4037
(1 sentences)

Sequence

71966 reads, 37356.0 reads per million, 9 experiments

ACAAUUGCACUCGUCUGUACCGCCcccaugcggauggCGGACAACGAUGGCAAUGCU
...(((((..((((.(((.(((((.((....))..))))))))))))..)))))...

Structure

ACA     AC    C   A     -c  a 
   AUUGC  UCGU UGU CCGCC  cc u
   |||||  |||| ||| |||||  ||  
   UAACG  AGCA ACA GGCgg  gg g
UCG     GU    -   -     ua  c 

Annotation confidence High

Genome context

ref|NW_004191496.1|: 12219-12275 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cin-mir-4037

Mature cin-miR-4037-5p

• Accession: MIMAT0016563
• Description: Ciona intestinalis cin-miR-4037-5p mature miRNA
• Sequence: 1 - ACAAUUGCACUCGUCUGUACCGCC - 24
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4037-3p

• Accession: MIMAT0016564
• Description: Ciona intestinalis cin-miR-4037-3p mature miRNA
• Sequence: 38 - CGGACAACGAUGGCAAUGCU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39