Stem-loop cin-mir-4045

Accession

MI0015596

Description

Ciona intestinalis cin-mir-4045 precursor miRNA

Sequence

1874 reads, 819 reads per million, 2 experiments

CCACAAUGAAAGUAGAUGUCCGuuggccauaaaCGGGAUCACUAUCAUUGUGA
.((((((((.(((.(((.((((((.......)))))))))))).)))))))).

Structure

C        A   A   G      gg 
 CACAAUGA AGU GAU UCCGuu  c
 |||||||| ||| ||| ||||||  c
 GUGUUACU UCA CUA GGGCaa  a
A        A   -   -      au 

Annotation confidence Not enough data

Genome context

scaffold_186: 59196-59248 [-]

Mature cin-miR-4045-5p

• Accession: MIMAT0016579
• Description: Ciona intestinalis cin-miR-4045-5p mature miRNA
• Sequence: 1 - CCACAAUGAAAGUAGAUGUCCG - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4045-3p

• Accession: MIMAT0016580
• Description: Ciona intestinalis cin-miR-4045-3p mature miRNA
• Sequence: 34 - CGGGAUCACUAUCAUUGUGA - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39