Stem-loop cin-mir-4047

Accession

MI0015598

Description

Ciona intestinalis cin-mir-4047 precursor miRNA

Sequence

6398 reads, 574.0 reads per million, 8 experiments

CCAGACACUCAGAAACACGAUUugucgacacaaUUGUGUAUCUGAGUGUUUCU
..(((((((((((.((((((((.((....)))))))))).)))))))))))..

Structure

CC           A        u  c 
  AGACACUCAGA ACACGAUU gu g
  ||||||||||| |||||||| ||  
  UUUGUGAGUCU UGUGUUaa ca a
UC           A        -  c 

Annotation confidence High

Genome context

ref|NC_020166.1|: 4157242-4157294 [-]

Mature cin-miR-4047-5p

• Accession: MIMAT0016583
• Description: Ciona intestinalis cin-miR-4047-5p mature miRNA
• Sequence: 1 - CCAGACACUCAGAAACACGAUU - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4047-3p

• Accession: MIMAT0016584
• Description: Ciona intestinalis cin-miR-4047-3p mature miRNA
• Sequence: 34 - UUGUGUAUCUGAGUGUUUCU - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39