Stem-loop cin-mir-4053

Accession

MI0015604

Description

Ciona intestinalis cin-mir-4053 precursor miRNA

Sequence

245897 reads, 10592.0 reads per million, 8 experiments

CGCCGGGGUAUGACGUCGUACUgugacguagguugcgcagUAGUACGUCGUUCUCCGGACGG
((((((((.(((((((..(((((((.((.....)))))))))..))))))).)))))).)).

Structure

-  -      U       CG       a  u 
 CG CCGGGG AUGACGU  UACUgug cg a
 || |||||| |||||||  ||||||| || g
 GC GGCCUC UGCUGCA  AUgacgc gu g
G  A      U       UG       -  u 

Annotation confidence High

Genome context

ref|NW_004190420.1|: 146779-146840 [+]

Mature cin-miR-4053-5p

• Accession: MIMAT0016595
• Description: Ciona intestinalis cin-miR-4053-5p mature miRNA
• Sequence: 1 - CGCCGGGGUAUGACGUCGUACU - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4053-3p

• Accession: MIMAT0016596
• Description: Ciona intestinalis cin-miR-4053-3p mature miRNA
• Sequence: 41 - UAGUACGUCGUUCUCCGGACGG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39