Stem-loop cin-mir-4056

Accession

MI0015607

Description

Ciona intestinalis cin-mir-4056 precursor miRNA

Sequence

47 reads, 20 reads per million, 2 experiments

ACUGAUGUAGAACAAGGCAUGCGcaaacaaccgCGCGUCUUGUUCUACUCACC
..(((.((((((((((((..((((........)))))))))))))))))))..

Structure

AC   U            AU    aaa 
  UGA GUAGAACAAGGC  GCGc   c
  ||| ||||||||||||  ||||    
  ACU CAUCUUGUUCUG  CGCg   a
CC   -            --    cca 

Annotation confidence Not enough data

Genome context

5q: 863632-863684 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cin-mir-4056

Mature cin-miR-4056-5p

• Accession: MIMAT0016601
• Description: Ciona intestinalis cin-miR-4056-5p mature miRNA
• Sequence: 1 - ACUGAUGUAGAACAAGGCAUGCG - 23
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4056-3p

• Accession: MIMAT0016602
• Description: Ciona intestinalis cin-miR-4056-3p mature miRNA
• Sequence: 34 - CGCGUCUUGUUCUACUCACC - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39