miRBase entry: cin-mir-4057

Stem-loop cin-mir-4057


Accession
MI0015608
Description
Ciona intestinalis cin-mir-4057 precursor miRNA


Sequence

10590 reads, 991.0 reads per million, 9 experiments
GGCUUGGCGACUGUAGCAUAACAcggauagugUUUGCUACUUUCACCAAGAUC
..(((((.((..((((((.(((((.....)))))))))))..)).)))))...

Structure
-GG     C  CU      U     g 
   CUUGG GA  GUAGCA AACAc g
   ||||| ||  |||||| ||||| a
   GAACC CU  CAUCGU UUgug u
CUA     A  UU      -     a 


Annotation confidence High
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Genome context
ref|NC_020173.1|: 5547198-5547250 [-]

Database links

Mature cin-miR-4057-5p

Accession MIMAT0016603
Description Ciona intestinalis cin-miR-4057-5p mature miRNA
Sequence 1 - GGCUUGGCGACUGUAGCAUAACA - 23
Evidence experimental
Illumina [1]

Mature cin-miR-4057-3p

Accession MIMAT0016604
Description Ciona intestinalis cin-miR-4057-3p mature miRNA
Sequence 33 - UUUGCUACUUUCACCAAGAUC - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39