miRBase entry: cin-mir-4058

Stem-loop cin-mir-4058


Accession
MI0015609
Description
Ciona intestinalis cin-mir-4058 precursor miRNA


Sequence

2668 reads, 1016 reads per million, 2 experiments
AAGGAUGCCGGUUUGAGCUuuaaaagguuaaauauuaguuuggguuuu
..((((....((((((.(((...))).))))))....)))).......

Structure
-----AA    GCCG      G   u 
       GGAU    GUUUGA CUu  
       ||||    |||||| ||| a
       uuug    uaaauu gaa  
uuuuggg    auua      g   a 


Annotation confidence Not enough data
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Genome context
scaffold_7007: 781-828 [-]

Database links

Mature cin-miR-4058-5p

Accession MIMAT0016605
Description Ciona intestinalis cin-miR-4058-5p mature miRNA
Sequence 1 - AAGGAUGCCGGUUUGAGCU - 19
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39