miRBase entry: cin-mir-4064

Stem-loop cin-mir-4064


Accession
MI0015615
Description
Ciona intestinalis cin-mir-4064 precursor miRNA


Sequence

34 reads, 11 reads per million, 2 experiments
AGUCAGGAUUACGGUUAGUUUUuaaacuaaAACAACCGGUAACCCUGUCCG
.(.((((.((((((((.(((((......))))))))).)))).)))).)..

Structure
-A U    A    -    A     ua 
  G CAGG UUAC GGUU GUUUU  a
  | |||| |||| |||| |||||   
  C GUCC AAUG CCAA CAAaa  a
GC U    C    G    -     uc 


Annotation confidence Not enough data
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Genome context
8q: 6232164-6232214 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4064
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4064-5p

Accession MIMAT0016616
Description Ciona intestinalis cin-miR-4064-5p mature miRNA
Sequence 1 - AGUCAGGAUUACGGUUAGUUUU - 22
Evidence experimental
Illumina [1]

Mature cin-miR-4064-3p

Accession MIMAT0016617
Description Ciona intestinalis cin-miR-4064-3p mature miRNA
Sequence 31 - AACAACCGGUAACCCUGUCCG - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39