Stem-loop cin-mir-4065

Accession

MI0015616

Description

Ciona intestinalis cin-mir-4065 precursor miRNA

Sequence

1 reads, 1 reads per million, 1 experiments

CACUGUGGAUCUUGUCCUAUACuugucgggcgcagcuacaauuaaucagUAUCGACAAGAUCUCUCAGUGG
(((((.((((((((((..((((((((..(((...)))))).......))))).))))))))))..))))).

Structure

-     -U          CU     -------   cg   g 
 CACUG  GGAUCUUGUC  AUACu       ugu  ggc  
 |||||  ||||||||||  |||||       |||  ||| c
 GUGAC  UCUAGAACAG  UAUga       aca  ucg  
G     UC          -C     cuaauua   --   a 

Annotation confidence Not enough data

Genome context

1p: 5592325-5592395 [+]

Mature cin-miR-4065-5p

• Accession: MIMAT0016618
• Description: Ciona intestinalis cin-miR-4065-5p mature miRNA
• Sequence: 1 - CACUGUGGAUCUUGUCCUAUAC - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4065-3p

• Accession: MIMAT0016619
• Description: Ciona intestinalis cin-miR-4065-3p mature miRNA
• Sequence: 50 - UAUCGACAAGAUCUCUCAGUGG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39