miRBase entry: cin-mir-4066

Stem-loop cin-mir-4066


Accession
MI0015617
Description
Ciona intestinalis cin-mir-4066 precursor miRNA


Sequence

15 reads, 6 reads per million, 2 experiments
CCAGAUGUGGUGCAGGCAUGCGaaaguugCAUGCCUUUAUCAUGUCCG
...(((((((((.((((((((((...)))))))))).)))))))))..

Structure
CCA         C          a 
   GAUGUGGUG AGGCAUGCGa  
   ||||||||| |||||||||| a
   CUGUACUAU UCCGUACguu  
-GC         U          g 


Annotation confidence Not enough data
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Genome context
5q: 864513-864560 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from cin-mir-4066
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4066-5p

Accession MIMAT0016620
Description Ciona intestinalis cin-miR-4066-5p mature miRNA
Sequence 1 - CCAGAUGUGGUGCAGGCAUGCG - 22
Evidence experimental
Illumina [1]

Mature cin-miR-4066-3p

Accession MIMAT0016621
Description Ciona intestinalis cin-miR-4066-3p mature miRNA
Sequence 30 - CAUGCCUUUAUCAUGUCCG - 48
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39