Stem-loop cin-mir-4068

Accession

MI0015619

Description

Ciona intestinalis cin-mir-4068 precursor miRNA

Sequence

57 reads, 23 reads per million, 2 experiments

AAGUCUUUGCCCAACAGCAAcauguuucucaccauugcuucaugUAUGCUGAUGAACAAAGGCUUG
(((((((((..((.((((((((((...(........)...))))).))))).))..))))))))).

Structure

-         CC  A     -     uuu uca 
 AAGUCUUUG  CA CAGCA Acaug   c   c
 |||||||||  || ||||| |||||   |    
 UUCGGAAAC  GU GUCGU Uguac   g   c
G         AA  A     A     uuc uua 

Annotation confidence Not enough data

Genome context

5q: 1331150-1331215 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-4068

Mature cin-miR-4068-5p

• Accession: MIMAT0016624
• Description: Ciona intestinalis cin-miR-4068-5p mature miRNA
• Sequence: 1 - AAGUCUUUGCCCAACAGCAA - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4068-3p

• Accession: MIMAT0016625
• Description: Ciona intestinalis cin-miR-4068-3p mature miRNA
• Sequence: 45 - UAUGCUGAUGAACAAAGGCUUG - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39