Stem-loop cin-mir-4069

Accession

MI0015620

Description

Ciona intestinalis cin-mir-4069 precursor miRNA

Sequence

38 reads, 13 reads per million, 2 experiments

CUACCCUGUCUUUAAGCUGagucgcaagagggcagugcUCAGCUUAAUAACUGGGCG
...(((.((..(((((((((((.((......))...)))))))))))..)).)))..

Structure

CUA   U  CU           --c  aa 
   CCC GU  UUAAGCUGagu   gc  g
   ||| ||  |||||||||||   ||   
   GGG CA  AAUUCGACUcg   cg  a
-GC   U  AU           uga  gg 

Annotation confidence Not enough data

Genome context

7q: 3937889-3937945 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-4069

Mature cin-miR-4069-5p

• Accession: MIMAT0016626
• Description: Ciona intestinalis cin-miR-4069-5p mature miRNA
• Sequence: 1 - CUACCCUGUCUUUAAGCUG - 19
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4069-3p

• Accession: MIMAT0016627
• Description: Ciona intestinalis cin-miR-4069-3p mature miRNA
• Sequence: 39 - UCAGCUUAAUAACUGGGCG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39