miRBase entry: cin-mir-4071

Stem-loop cin-mir-4071


Accession
MI0015622
Description
Ciona intestinalis cin-mir-4071 precursor miRNA


Sequence

48595 reads, 54456.0 reads per million, 9 experiments
CUUGCUCUUACUGUGACAUCCCUugccaagGGAUAUCCAGACAGGGCAAA
.(((((((..(((.((.(((((((...))))))).)))))..))))))).

Structure
C       UA   U  C       g 
 UUGCUCU  CUG GA AUCCCUu  
 |||||||  ||| || ||||||| c
 AACGGGA  GAC CU UAGGgaa  
A       CA   -  A       c 


Annotation confidence High
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Genome context
ref|NC_020174.1|: 4379242-4379291 [-]

Database links

Mature cin-miR-4071-5p

Accession MIMAT0016630
Description Ciona intestinalis cin-miR-4071-5p mature miRNA
Sequence 1 - CUUGCUCUUACUGUGACAUCCCU - 23
Evidence experimental
Illumina [1]

Mature cin-miR-4071-3p

Accession MIMAT0016631
Description Ciona intestinalis cin-miR-4071-3p mature miRNA
Sequence 31 - GGAUAUCCAGACAGGGCAAA - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39