Stem-loop cin-mir-4072

Accession

MI0015623

Description

Ciona intestinalis cin-mir-4072 precursor miRNA

Sequence

201 reads, 351.0 reads per million, 9 experiments

UUUGUUUUAAGGCUUCAUUUUCUacaaaugucagAAAAUGGAUCUUGACAAAAC
((((((..((((.((((((((((((....)).))))))))))))))))))))..

Structure

--      UU    C          -  a 
  UUUGUU  AAGG UUCAUUUUCU ac a
  ||||||  |||| |||||||||| ||  
  AAACAG  UUCU AGGUAAAAga ug a
CA      --    -          c  u 

Annotation confidence High

Genome context

ref|NW_004191538.1|: 1666-1719 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-4072

Mature cin-miR-4072-5p

• Accession: MIMAT0016632
• Description: Ciona intestinalis cin-miR-4072-5p mature miRNA
• Sequence: 1 - UUUGUUUUAAGGCUUCAUUUUCU - 23
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4072-3p

• Accession: MIMAT0016633
• Description: Ciona intestinalis cin-miR-4072-3p mature miRNA
• Sequence: 35 - AAAAUGGAUCUUGACAAAAC - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39