miRBase entry: cin-mir-4077b

Stem-loop cin-mir-4077b


Accession
MI0015629
Description
Ciona intestinalis cin-mir-4077b precursor miRNA


Sequence

295 reads, 127 reads per million, 2 experiments
AAGUUGGAAUUUGAUUGACUggguguugaaacguaccaguuaauuaacuucaacua
.(((((((..((((((((((((.(((....)))..)))))))))))).))))))).

Structure
A       AU            -g   u 
 AGUUGGA  UUGAUUGACUgg  ugu g
 |||||||  ||||||||||||  |||  
 ucaacuu  aauuaauugacc  gca a
a       -c            au   a 


Annotation confidence Not enough data
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Genome context
7q: 6155725-6155780 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from cin-mir-4077b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4077b-5p

Accession MIMAT0016643
Description Ciona intestinalis cin-miR-4077b-5p mature miRNA
Sequence 1 - AAGUUGGAAUUUGAUUGACU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39