miRBase entry: cin-mir-4082

Stem-loop cin-mir-4082


Accession
MI0015635
Description
Ciona intestinalis cin-mir-4082 precursor miRNA


Sequence

5 reads, 2 reads per million, 1 experiments
CAGCUCAACUUAUACAGAACugagaccacaAUUCUGUAUGGAGUUGAACU
.((.(((((((((((((((.((......)).)))))))).))))))).))

Structure
C  C       -        C  ag 
 AG UCAACUU AUACAGAA ug  a
 || ||||||| |||||||| ||   
 UC AGUUGAG UAUGUCUU ac  c
-  A       G        A  ac 


Annotation confidence Not enough data
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Genome context
2q: 6481027-6481076 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4082
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4082-5p

Accession MIMAT0016653
Description Ciona intestinalis cin-miR-4082-5p mature miRNA
Sequence 1 - CAGCUCAACUUAUACAGAAC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4082-3p

Accession MIMAT0016654
Description Ciona intestinalis cin-miR-4082-3p mature miRNA
Sequence 31 - AUUCUGUAUGGAGUUGAACU - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39