Stem-loop cin-mir-4083

Accession

MI0015636

Description

Ciona intestinalis cin-mir-4083 precursor miRNA

Sequence

494 reads, 68.0 reads per million, 5 experiments

GUGGGUAUAUUAGGAAGCUUCCaucuaugcaauauuuaaaccggUAUCUUUCUAUUUUCCCACAG
(((((.....(((((((...((....................))...)))))))....)))))..

Structure

--     UAUAU       CUU  aucuaugca 
  GUGGG     UAGGAAG   CC         a
  |||||     |||||||   ||          
  CACCC     AUCUUUC   gg         u
GA     -UUUU       UAU  ccaaauuua 

Annotation confidence High

Genome context

ref|NC_020178.1|: 1344369-1344433 [-]

Mature cin-miR-4083-5p

• Accession: MIMAT0016655
• Description: Ciona intestinalis cin-miR-4083-5p mature miRNA
• Sequence: 1 - GUGGGUAUAUUAGGAAGCUUCC - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4083-3p

• Accession: MIMAT0016656
• Description: Ciona intestinalis cin-miR-4083-3p mature miRNA
• Sequence: 45 - UAUCUUUCUAUUUUCCCACAG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39