Stem-loop cin-mir-4084

Accession

MI0015637

Description

Ciona intestinalis cin-mir-4084 precursor miRNA

Sequence

88 reads, 29 reads per million, 2 experiments

AGAUCUUCUGGCUAUAGUUUguuugaacuucuauucuuuaagaucaaaauacAAACAAUUAUCAGAAGAUUUC
.((((((((((..((.((((((((((.(((.........))).))))...)))))).))..))))))))))..

Structure

-A          CU  A      ---    a   cua 
  GAUCUUCUGG  AU GUUUgu   uuga cuu   u
  ||||||||||  || ||||||   |||| |||   u
  UUAGAAGACU  UA CAAAca   aacu gaa   c
CU          AU  A      uaa    a   uuu 

Annotation confidence Not enough data

Genome context

4q: 6737327-6737399 [-]

Mature cin-miR-4084-5p

• Accession: MIMAT0016657
• Description: Ciona intestinalis cin-miR-4084-5p mature miRNA
• Sequence: 1 - AGAUCUUCUGGCUAUAGUUU - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4084-3p

• Accession: MIMAT0016658
• Description: Ciona intestinalis cin-miR-4084-3p mature miRNA
• Sequence: 53 - AAACAAUUAUCAGAAGAUUUC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39