Accession
MI0015638
Description
Ciona intestinalis
cin-mir-4085 precursor miRNA
Literature search
1 open access papers mention cin-mir-4085
(1 sentences)
(1 sentences)
Sequence
615
reads,
102.0
reads per million, 6 experiments
UCGCACGUUGUGCAGGCAAGCAGGaauagaacaaccUGCUGUGUUGUCCAAUUGUG
.((((.((((.((((...((((((..........))))))...)))).))))))))
.((((.((((.((((...((((((..........))))))...)))).))))))))
Structure
U C U GCA aaua CGCA GUUG GCAG AGCAGG g |||| |||| |||| |||||| GUGU UAAC UGUU UCGUcc a - - C GUG aaca
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
ref|NC_020170.1|: 663501-663556 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from cin-mir-4085
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cin-miR-4085-5p
| Accession | MIMAT0016659 |
| Description | Ciona intestinalis cin-miR-4085-5p mature miRNA |
| Sequence | 1 - UCGCACGUUGUGCAGGCAAGCAGG - 24 |
| Evidence |
experimental
Illumina [1] |
Mature cin-miR-4085-3p
| Accession | MIMAT0016660 |
| Description | Ciona intestinalis cin-miR-4085-3p mature miRNA |
| Sequence | 37 - UGCUGUGUUGUCCAAUUGUG - 56 |
| Evidence |
experimental
Illumina [1] |
References
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