Stem-loop cin-mir-4089

Accession

MI0015642

Description

Ciona intestinalis cin-mir-4089 precursor miRNA

Sequence

90 reads, 29 reads per million, 2 experiments

CUUGGAAAUGCAUGUGCUUUgcaugacgauuuuuaaugacagcaacagcacaugcgcauuugaa
.(((((..((((((((((((((.((.((........)).)))))).))))))))))..))))).

Structure

C     AA          -    a  a  auu 
 UUGGA  UGCAUGUGCU UUgc ug cg   u
 |||||  |||||||||| |||| || ||    
 aguuu  gcguacacga aacg ac gu   u
a     ac          c    -  a  aau 

Annotation confidence Not enough data

Genome context

1q: 5364509-5364572 [+]

Mature cin-miR-4089-5p

• Accession: MIMAT0016666
• Description: Ciona intestinalis cin-miR-4089-5p mature miRNA
• Sequence: 1 - CUUGGAAAUGCAUGUGCUUU - 20
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39