miRBase entry: cin-mir-4090

Stem-loop cin-mir-4090


Accession
MI0015643
Description
Ciona intestinalis cin-mir-4090 precursor miRNA


Sequence

uaacuaaaucgacucguauguuugguacuaucaaguaagaaagcaaauggaaggcAGGUAGUUGGUUGUGUUG
((((..(((((((((((.(((((..((((....))))...))))).)))..........))))))))..))))

Structure
    ua        ----------   a     -gg    a 
uaac  aaucgacu          cgu uguuu   uacu u
||||  ||||||||          ||| |||||   ||||  
GUUG  UUGGUUGA          gua acgaa   auga c
    UG        UGGAcggaag   a     aga    a 


Annotation confidence Not enough data
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Genome context
scaffold_156: 91454-91526 [-]

Database links

Mature cin-miR-4090-3p

Accession MIMAT0016667
Description Ciona intestinalis cin-miR-4090-3p mature miRNA
Sequence 56 - AGGUAGUUGGUUGUGUUG - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39