miRBase entry: cin-mir-4092

Stem-loop cin-mir-4092


Accession
MI0015645
Description
Ciona intestinalis cin-mir-4092 precursor miRNA


Sequence

115 reads, 103 reads per million, 2 experiments
CGUGUUGUGGAGAACGACAAuagcgcaacuugcUAGGUCUGUCUACACAGCAA
..(((((((.(((..(((..(((((.....))))).)))..))).))))))).

Structure
CG       G   AC   AA     c 
  UGUUGUG AGA  GAC  uagcg a
  ||||||| |||  |||  ||||| a
  ACGACAC UCU  CUG  AUcgu c
-A       A   GU   -G     u 


Annotation confidence Not enough data
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Genome context
4q: 181157-181209 [+]

Database links

Mature cin-miR-4092-5p

Accession MIMAT0016670
Description Ciona intestinalis cin-miR-4092-5p mature miRNA
Sequence 1 - CGUGUUGUGGAGAACGACAA - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4092-3p

Accession MIMAT0016671
Description Ciona intestinalis cin-miR-4092-3p mature miRNA
Sequence 34 - UAGGUCUGUCUACACAGCAA - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39