miRBase entry: cin-mir-4096

Stem-loop cin-mir-4096


Accession
MI0015649
Description
Ciona intestinalis cin-mir-4096 precursor miRNA


Sequence

8 reads, 5 reads per million, 2 experiments
cacaauuugcuaaauuggcugaaacuuuuguauugguaugacaguuUGCAAUAUAGCUAUUUUGUG
(((((...((((.((((((((..(((........)))....))))...)))).))))....)))))

Structure
     -uuu    a    ---    --aa   uuu 
cacaa    gcua auug   gcug    acu   g
|||||    |||| ||||   ||||    |||    
GUGUU    CGAU UAAC   ugac    ugg   u
     UUAU    A    GUu    agua   uua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cin-miR-4096-3p

Accession MIMAT0016677
Description Ciona intestinalis cin-miR-4096-3p mature miRNA
Sequence 47 - UGCAAUAUAGCUAUUUUGUG - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39