Stem-loop cin-mir-4098

Accession

MI0015651

Description

Ciona intestinalis cin-mir-4098 precursor miRNA

Sequence

63 reads, 23 reads per million, 2 experiments

AUCGCUCUGUUAUGCUUCGGuuaagcgauauacguugucaCCGAAGCGUAACAGAGCGAU
(((((((((((((((((((((..((((.....))))...)))))))))))))))))))))

Structure

                     -ua    a 
AUCGCUCUGUUAUGCUUCGGu   agcg u
|||||||||||||||||||||   |||| a
UAGCGAGACAAUGCGAAGCCa   uugc u
                     cug    a 

Annotation confidence Not enough data

Genome context

8q: 7236145-7236204 [-]

Mature cin-miR-4098-5p

• Accession: MIMAT0016680
• Description: Ciona intestinalis cin-miR-4098-5p mature miRNA
• Sequence: 1 - AUCGCUCUGUUAUGCUUCGG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4098-3p

• Accession: MIMAT0016681
• Description: Ciona intestinalis cin-miR-4098-3p mature miRNA
• Sequence: 41 - CCGAAGCGUAACAGAGCGAU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39