Stem-loop cin-mir-4100

Accession

MI0015653

Description

Ciona intestinalis cin-mir-4100 precursor miRNA

Sequence

37 reads, 14 reads per million, 2 experiments

UGAGCUUUCGUCUUAUGAUUGauguaucauuAAUCAUUAGAUGAAAACUCACG
((((.((((((((.((((((((((...)))))))))).)))))))).))))..

Structure

--    C        U          u 
  UGAG UUUCGUCU AUGAUUGaug  
  |||| |||||||| |||||||||| a
  ACUC AAAGUAGA UACUAAuuac  
GC    A        U          u 

Annotation confidence Not enough data

Genome context

7q: 5166716-5166768 [-]

Mature cin-miR-4100-5p

• Accession: MIMAT0016684
• Description: Ciona intestinalis cin-miR-4100-5p mature miRNA
• Sequence: 1 - UGAGCUUUCGUCUUAUGAUUG - 21
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4100-3p

• Accession: MIMAT0016685
• Description: Ciona intestinalis cin-miR-4100-3p mature miRNA
• Sequence: 32 - AAUCAUUAGAUGAAAACUCACG - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39