miRBase entry: cin-mir-4077d

Stem-loop cin-mir-4077d


Accession
MI0015656
Description
Ciona intestinalis cin-mir-4077d precursor miRNA


Sequence

72 reads, 36 reads per million, 2 experiments
AAGUUGGCUGUGAUUUGGCUgguuguaugauaauaucaguuaaaugacaccaacua
.((((((.(((.(((((((((((...........))))))))))).))))))))).

Structure
A      C   G           ugua 
 AGUUGG UGU AUUUGGCUggu    u
 |||||| ||| |||||||||||    g
 ucaacc aca uaaauugacua    a
a      -   g           uaau 


Annotation confidence Not enough data
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Genome context
7q: 6153229-6153284 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from cin-mir-4077d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4077d-5p

Accession MIMAT0016689
Description Ciona intestinalis cin-miR-4077d-5p mature miRNA
Sequence 1 - AAGUUGGCUGUGAUUUGGCU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39