Stem-loop cin-mir-4109

Accession

MI0015663

Description

Ciona intestinalis cin-mir-4109 precursor miRNA

Sequence

1 reads, 1 reads per million, 1 experiments

ACCCCGCUUAAUCGACCCAAguuuaaccggaccaguuuggcuuggucccaauGUGGUCCGAUUAAGCGGG
..((((((((((((..(((.(((.....(((((((......))))))).))).)))..))))))))))))

Structure

AC            AC   A   uaacc       uu 
  CCCGCUUAAUCG  CCA guu     ggaccag  u
  ||||||||||||  ||| |||     |||||||   
  GGGCGAAUUAGC  GGU uaa     ccugguu  g
--            CU   G   ----c       cg 

Annotation confidence Not enough data

Genome context

2q: 960375-960444 [+]

Mature cin-miR-4109-5p

• Accession: MIMAT0016696
• Description: Ciona intestinalis cin-miR-4109-5p mature miRNA
• Sequence: 1 - ACCCCGCUUAAUCGACCCAA - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4109-3p

• Accession: MIMAT0016697
• Description: Ciona intestinalis cin-miR-4109-3p mature miRNA
• Sequence: 53 - GUGGUCCGAUUAAGCGGG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39