miRBase entry: cin-mir-4111

Stem-loop cin-mir-4111


Accession
MI0015665
Description
Ciona intestinalis cin-mir-4111 precursor miRNA


Sequence

ucacaauuaaacagucuuuucuuuauuuacaauuucaguaauuuugaaaAUUUGAUUAUUUUGUGGGU
((((((.(((.(((..(((((.....((((.......))))....))))).))).)))..))))))..

Structure
--      -u   a   uc     uuuau    aa 
  ucacaa  uaa cag  uuuuc     uuac  u
  ||||||  ||| |||  |||||     ||||  u
  GGUGUU  AUU GUU  Aaaag     aaug  u
UG      UU   A   -U     -uuuu    ac 


Annotation confidence Not enough data
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Genome context
4q: 5687695-5687762 [+]

Database links

Mature cin-miR-4111-3p

Accession MIMAT0016700
Description Ciona intestinalis cin-miR-4111-3p mature miRNA
Sequence 50 - AUUUGAUUAUUUUGUGGGU - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39