Stem-loop cin-mir-4112

Accession

MI0015666

Description

Ciona intestinalis cin-mir-4112 precursor miRNA

Sequence

3 reads, 2 reads per million, 1 experiments

AUACAUUCAUUUUGACAUACuauuggcauuguacuuguuuuuaaugUAUGUAAUGAUGAUGUAUGG
((((((.((((...((((((....((((.......))))......))))))...))))))))))..

Structure

--      U    UUG      --uauu    uu 
  AUACAU CAUU   ACAUAC      ggca  g
  |||||| ||||   ||||||      ||||  u
  UAUGUA GUAG   UGUAUg      uugu  a
GG      -    UAA      uaauuu    uc 

Annotation confidence Not enough data

Genome context

4q: 6021165-6021230 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-4112

Mature cin-miR-4112-5p

• Accession: MIMAT0016701
• Description: Ciona intestinalis cin-miR-4112-5p mature miRNA
• Sequence: 1 - AUACAUUCAUUUUGACAUAC - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4112-3p

• Accession: MIMAT0016702
• Description: Ciona intestinalis cin-miR-4112-3p mature miRNA
• Sequence: 47 - UAUGUAAUGAUGAUGUAUGG - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39