miRBase entry: cin-mir-4113

Stem-loop cin-mir-4113


Accession
MI0015667
Description
Ciona intestinalis cin-mir-4113 precursor miRNA


Sequence

47 reads, 10.0 reads per million, 3 experiments
UCUGGUUUUCAAUGUGUAAAuuugguuaauuuacgccuggauaacccgua
...((((.((...(((((((((.....)))))))))...)).))))....

Structure
-UCU    U  AAU         u 
    GGUU UC   GUGUAAAuu g
    |||| ||   ||||||||| g
    ccaa ag   cgcauuuaa u
augc    u  guc         u 


Annotation confidence Not enough data
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Genome context
ref|NC_020169.1|: 4099956-4100005 [-]

Database links

Mature cin-miR-4113-5p

Accession MIMAT0016703
Description Ciona intestinalis cin-miR-4113-5p mature miRNA
Sequence 1 - UCUGGUUUUCAAUGUGUAAA - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39