miRBase entry: cin-mir-4114

Stem-loop cin-mir-4114


Accession
MI0015668
Description
Ciona intestinalis cin-mir-4114 precursor miRNA


Sequence

22 reads, 8 reads per million, 2 experiments
UAAGUUGUAAUAUGUUGUGUcuauguugucaauacuuauuauauuaugacuucacagacguguagauaaaguagacacacccguugaccaaucaaa
...((((....(((.(((((((((.(((((.((((........................)))).))))).)))))))))..)))....))))....

Structure
-UAA    UAAU   -U         g     a    uuauuauauua 
    GUUG    AUG  UGUGUcuau uuguc auac           u
    ||||    |||  ||||||||| ||||| ||||            
    uaac    ugc  acacagaug aauag ugug           g
aaac    cagu   cc         a     a    cagacacuuca 


Annotation confidence Not enough data
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Genome context
scaffold_89: 439106-439201 [-]

Database links

Mature cin-miR-4114-5p

Accession MIMAT0016704
Description Ciona intestinalis cin-miR-4114-5p mature miRNA
Sequence 1 - UAAGUUGUAAUAUGUUGUGU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39