Stem-loop cin-mir-4117

Accession

MI0015671

Description

Ciona intestinalis cin-mir-4117 precursor miRNA

Sequence

UGUGUGAAUGUAAUAGAAuuuaauugguuuaauauaaaaauuuaaauuuuuuuuucggaacaaaaaacuaca
(((.((((......(((((((((....((((...))))...)))))))))...))))..)))..........

Structure

----------   -G    UGUAAU         uugg    a 
          UGU  UGAA      AGAAuuuaa    uuua  
          |||  ||||      |||||||||    |||| u
          aca  gcuu      uuuuaaauu    aaau  
acaucaaaaa   ag    ---uuu         -uaa    a 

Annotation confidence Not enough data

Genome context

10q: 1066062-1066133 [-]

Mature cin-miR-4117-5p

• Accession: MIMAT0016708
• Description: Ciona intestinalis cin-miR-4117-5p mature miRNA
• Sequence: 1 - UGUGUGAAUGUAAUAGAA - 18
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39