Stem-loop cin-mir-4120

Accession

MI0015674

Description

Ciona intestinalis cin-mir-4120 precursor miRNA

Sequence

10 reads, 3 reads per million, 2 experiments

CAUGAUGAUGAGAAUUUGUucauaucuauauggguugagauuccaucaaugaa
(((..(((((.((((((.((((((....))))))...))))))))))))))..

Structure

--   GA     A      --G      u 
  CAU  UGAUG GAAUUU   Uucaua c
  |||  ||||| ||||||   ||||||  
  gua  acuac cuuaga   ggguau u
aa   --     -      guu      a 

Annotation confidence Not enough data

Genome context

2q: 5676685-5676737 [+]

Mature cin-miR-4120-5p

• Accession: MIMAT0016712
• Description: Ciona intestinalis cin-miR-4120-5p mature miRNA
• Sequence: 1 - CAUGAUGAUGAGAAUUUGU - 19
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39