miRBase entry: cin-mir-4123

Stem-loop cin-mir-4123


Accession
MI0015677
Description
Ciona intestinalis cin-mir-4123 precursor miRNA


Sequence

AGCUUCUUCCUCAGCUCGCUUUgucggaaAGCAAACUCGGGAAGGCGCG
.((.(((((((.((...(((((.....)))))...)).))))))).)).

Structure
A  U       C  CUC     g 
 GC UCUUCCU AG   GCUUU u
 || ||||||| ||   ||||| c
 CG GGAAGGG UC   CGAaa g
G  C       C  AAA     g 


Annotation confidence Not enough data
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Genome context
1p: 4078708-4078756 [+]

Database links

Mature cin-miR-4123-5p

Accession MIMAT0016715
Description Ciona intestinalis cin-miR-4123-5p mature miRNA
Sequence 1 - AGCUUCUUCCUCAGCUCGCUUU - 22
Evidence experimental
Illumina [1]

Mature cin-miR-4123-3p

Accession MIMAT0016716
Description Ciona intestinalis cin-miR-4123-3p mature miRNA
Sequence 30 - AGCAAACUCGGGAAGGCGCG - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39