Stem-loop cin-mir-4123

Accession

MI0015677

Description

Ciona intestinalis cin-mir-4123 precursor miRNA

Sequence

AGCUUCUUCCUCAGCUCGCUUUgucggaaAGCAAACUCGGGAAGGCGCG
.((.(((((((.((...(((((.....)))))...)).))))))).)).

Structure

A  U       C  CUC     g 
 GC UCUUCCU AG   GCUUU u
 || ||||||| ||   ||||| c
 CG GGAAGGG UC   CGAaa g
G  C       C  AAA     g 

Annotation confidence Not enough data

Genome context

1p: 4078708-4078756 [+]

Mature cin-miR-4123-5p

• Accession: MIMAT0016715
• Description: Ciona intestinalis cin-miR-4123-5p mature miRNA
• Sequence: 1 - AGCUUCUUCCUCAGCUCGCUUU - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4123-3p

• Accession: MIMAT0016716
• Description: Ciona intestinalis cin-miR-4123-3p mature miRNA
• Sequence: 30 - AGCAAACUCGGGAAGGCGCG - 49
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39