miRBase entry: cin-mir-4003d

Stem-loop cin-mir-4003d


Accession
MI0015678
Description
Ciona intestinalis cin-mir-4003d precursor miRNA


Sequence

20 reads, 9 reads per million, 2 experiments
ugaguuggguauccacucuugcaaugaacaaaugUGAGAAUGGUAACCAAUACA
...(((((....(((.(((((((.........))))))).)))...)))))...

Structure
uga     guau   c       aug 
   guugg    cca ucuugca   a
   |||||    ||| |||||||   a
   UAACC    GGU AGAGUgu   c
ACA     -AAU   A       aaa 


Annotation confidence Not enough data
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Genome context
7q: 6148874-6148927 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from cin-mir-4003d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4003d-3p

Accession MIMAT0016717
Description Ciona intestinalis cin-miR-4003d-3p mature miRNA
Sequence 35 - UGAGAAUGGUAACCAAUACA - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39