Stem-loop cin-mir-4125

Accession

MI0015680

Description

Ciona intestinalis cin-mir-4125 precursor miRNA

Sequence

27 reads, 9 reads per million, 2 experiments

AUCAUUUGGCAAAGACAAAGguuauuaaaauaaaguuuuauauuuauauaguuaagccuuucuuuaauacuuuuguuuuuguccacuuu
......((((((((((((((((.((((((..((.((((..(((....)))...)))).))..))))))))))))))))))).)))....

Structure

AUCAUU   -             u      au  a    -ua   u 
      UGG CAAAGACAAAGgu auuaaa  aa guuu   uau u
      ||| ||||||||||||| ||||||  || ||||   |||  
      acc guuuuuguuuuca uaauuu  uu cgaa   aua a
--uuuc   u             -      cu  c    uug   u 

Annotation confidence Not enough data

Genome context

1q: 195690-195778 [-]

Mature cin-miR-4125-5p

• Accession: MIMAT0016719
• Description: Ciona intestinalis cin-miR-4125-5p mature miRNA
• Sequence: 1 - AUCAUUUGGCAAAGACAAAG - 20
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39