miRBase entry: cin-mir-4125

Stem-loop cin-mir-4125


Accession
MI0015680
Description
Ciona intestinalis cin-mir-4125 precursor miRNA


Sequence

27 reads, 10 reads per million, 2 experiments
AUCAUUUGGCAAAGACAAAGguuauuaaaauaaaguuuuauauuuauauaguuaagccuuucuuuaauacuuuuguuuuuguccacuuu
......((((((((((((((((.((((((..((.((((..(((....)))...)))).))..))))))))))))))))))).)))....

Structure
AUCAUU   -             u      au  a    -ua   u 
      UGG CAAAGACAAAGgu auuaaa  aa guuu   uau u
      ||| ||||||||||||| ||||||  || ||||   |||  
      acc guuuuuguuuuca uaauuu  uu cgaa   aua a
--uuuc   u             -      cu  c    uug   u 


Annotation confidence Not enough data
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Genome context
1q: 195690-195778 [-]

Database links

Mature cin-miR-4125-5p

Accession MIMAT0016719
Description Ciona intestinalis cin-miR-4125-5p mature miRNA
Sequence 1 - AUCAUUUGGCAAAGACAAAG - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39