Stem-loop cin-mir-4133

Accession

MI0015688

Description

Ciona intestinalis cin-mir-4133 precursor miRNA

Sequence

11 reads, 4 reads per million, 2 experiments

gcuacgcaaacguaacagacaauaaucaugucuaacuaauugucaguuauaauuagcugucuuugauuuuugCAUGUUGUGUUUUUGUAGC
((((((.((((((((((..(((.(((((.......((((((((.....)))))))).......))))).)))..)))))))))).))))))

Structure

      c          ga   u     ugucuaa        c 
gcuacg aaacguaaca  caa aauca       cuaauugu a
|||||| ||||||||||  ||| |||||       |||||||| g
CGAUGU UUUGUGUUGU  guu uuagu       gauuaaua u
      U          AC   u     uucuguc        u 

Annotation confidence Not enough data

Genome context

2q: 6602247-6602337 [-]

Mature cin-miR-4133-3p

• Accession: MIMAT0016730
• Description: Ciona intestinalis cin-miR-4133-3p mature miRNA
• Sequence: 73 - CAUGUUGUGUUUUUGUAGC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39