miRBase entry: cin-mir-4139

Stem-loop cin-mir-4139


Accession
MI0015694
Description
Ciona intestinalis cin-mir-4139 precursor miRNA


Sequence

CACUGAAACAUAGAUCACUUaaaauauuaacuuAAAGUGUUUACGUUUCGGU
.((((((((.((((.(((((.((........)).))))))))).))))))))

Structure
C        A    U     a  aua 
 ACUGAAAC UAGA CACUU aa   u
 |||||||| |||| ||||| ||    
 UGGCUUUG AUUU GUGAA uu   u
-        C    -     A  caa 


Annotation confidence Not enough data
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Genome context
5q: 2195206-2195257 [+]

Database links

Mature cin-miR-4139-5p

Accession MIMAT0016736
Description Ciona intestinalis cin-miR-4139-5p mature miRNA
Sequence 1 - CACUGAAACAUAGAUCACUU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4139-3p

Accession MIMAT0016737
Description Ciona intestinalis cin-miR-4139-3p mature miRNA
Sequence 34 - AAAGUGUUUACGUUUCGGU - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39