Stem-loop cin-mir-4141

Accession

MI0015696

Description

Ciona intestinalis cin-mir-4141 precursor miRNA

Sequence

3 reads, 2 reads per million, 1 experiments

UGGUCACAGCUGUUUGCACauuaugauaucacaaUGGCAAUCGCCUGCUGACCG
.((((((((.((.((((.((((.((....)).)))))))).)).))).))))).

Structure

U     -   C  U    A    a  a 
 GGUCA CAG UG UUGC Cauu ug u
 ||||| ||| || |||| |||| ||  
 CCAGU GUC GC AACG GUaa ac a
G     C   C  U    -    c  u 

Annotation confidence Not enough data

Genome context

6q: 1187422-1187475 [+]

Mature cin-miR-4141-5p

• Accession: MIMAT0016740
• Description: Ciona intestinalis cin-miR-4141-5p mature miRNA
• Sequence: 1 - UGGUCACAGCUGUUUGCAC - 19
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4141-3p

• Accession: MIMAT0016741
• Description: Ciona intestinalis cin-miR-4141-3p mature miRNA
• Sequence: 35 - UGGCAAUCGCCUGCUGACCG - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39