Stem-loop cin-mir-4148

Accession

MI0015703

Description

Ciona intestinalis cin-mir-4148 precursor miRNA

Sequence

18 reads, 6 reads per million, 2 experiments

GGAGUCGUGUCUGGACAGCucaugguaaaaccuaaguuauccucaaacgauuac
..((((((....(((.((((...(((...)))..)))).)))....))))))..

Structure

GG      GUCU   C    cau   a 
  AGUCGU    GGA AGCu   ggu  
  ||||||    ||| ||||   ||| a
  uuagca    ccu uuga   cca  
ca      aacu   a    -au   a 

Annotation confidence Not enough data

Genome context

2q: 1058794-1058847 [-]

Mature cin-miR-4148-5p

• Accession: MIMAT0016751
• Description: Ciona intestinalis cin-miR-4148-5p mature miRNA
• Sequence: 1 - GGAGUCGUGUCUGGACAGC - 19
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39