Stem-loop cin-mir-4149

Accession

MI0015704

Description

Ciona intestinalis cin-mir-4149 precursor miRNA

Sequence

UAAUCUUUGUUGAUGGAAAAguagaaccaccgucgcgagagguuucguuauuuccuuguuacgucacagaaggua
..((((((..(((((((((....(((..(((.((....))))))))....))))).......))))..)))))).

Structure

UA      GU    -------     Agua   cc   g  g 
  AUCUUU  UGAU       GGAAA    gaa  acc uc c
  ||||||  ||||       |||||    |||  ||| ||  
  uggaag  acug       ccuuu    cuu  ugg ag g
-a      ac    cauuguu     auug   --   -  a 

Annotation confidence Not enough data

Genome context

14q: 336924-336998 [+]

Mature cin-miR-4149-5p

• Accession: MIMAT0016752
• Description: Ciona intestinalis cin-miR-4149-5p mature miRNA
• Sequence: 1 - UAAUCUUUGUUGAUGGAAAA - 20
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39