miRBase entry: cin-mir-4149

Stem-loop cin-mir-4149


Accession
MI0015704
Description
Ciona intestinalis cin-mir-4149 precursor miRNA


Sequence

1 reads, 0 reads per million, 1 experiments
UAAUCUUUGUUGAUGGAAAAguagaaccaccgucgcgagagguuucguuauuuccuuguuacgucacagaaggua
..((((((..(((((((((....(((..(((.((....))))))))....))))).......))))..)))))).

Structure
UA      GU    -------     Agua   cc   g  g 
  AUCUUU  UGAU       GGAAA    gaa  acc uc c
  ||||||  ||||       |||||    |||  ||| ||  
  uggaag  acug       ccuuu    cuu  ugg ag g
-a      ac    cauuguu     auug   --   -  a 


Annotation confidence Not enough data
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Genome context
14q: 336924-336998 [+]

Database links

Mature cin-miR-4149-5p

Accession MIMAT0016752
Description Ciona intestinalis cin-miR-4149-5p mature miRNA
Sequence 1 - UAAUCUUUGUUGAUGGAAAA - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39