miRBase entry: cin-mir-4152

Stem-loop cin-mir-4152


Accession
MI0015707
Description
Ciona intestinalis cin-mir-4152 precursor miRNA


Sequence

AGAUGUAGUUGGUGUAAAgugacguacguuugaaugauaggaaacgauugaaacacgcgguaacuucccugcuuauuuaucc
(((((.(((.((.(..((((..(((..((((.(((...........))).))))..)))...))))))).))))))))....

Structure
----     U   U  U UA    -ga   ac    g   gaua 
    AGAUG AGU GG G  AAgu   cgu  guuu aau    g
    ||||| ||| || |  ||||   |||  |||| |||    g
    uuuau ucg cc c  uuca   gcg  caaa uua    a
ccua     -   u  - --    aug   ca    g   gcaa 


Annotation confidence Not enough data
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Genome context
scaffold_95: 154090-154171 [+]

Database links

Mature cin-miR-4152-5p

Accession MIMAT0016756
Description Ciona intestinalis cin-miR-4152-5p mature miRNA
Sequence 1 - AGAUGUAGUUGGUGUAAA - 18
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39