Stem-loop cin-mir-4152

Accession

MI0015707

Description

Ciona intestinalis cin-mir-4152 precursor miRNA

Sequence

AGAUGUAGUUGGUGUAAAgugacguacguuugaaugauaggaaacgauugaaacacgcgguaacuucccugcuuauuuaucc
(((((.(((.((.(..((((..(((..((((.(((...........))).))))..)))...))))))).))))))))....

Structure

----     U   U  U UA    -ga   ac    g   gaua 
    AGAUG AGU GG G  AAgu   cgu  guuu aau    g
    ||||| ||| || |  ||||   |||  |||| |||    g
    uuuau ucg cc c  uuca   gcg  caaa uua    a
ccua     -   u  - --    aug   ca    g   gcaa 

Annotation confidence Not enough data

Genome context

scaffold_95: 154090-154171 [+]

Mature cin-miR-4152-5p

• Accession: MIMAT0016756
• Description: Ciona intestinalis cin-miR-4152-5p mature miRNA
• Sequence: 1 - AGAUGUAGUUGGUGUAAA - 18
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39