miRBase entry: cin-mir-4155

Stem-loop cin-mir-4155


Accession
MI0015710
Description
Ciona intestinalis cin-mir-4155 precursor miRNA


Sequence

3 reads, 2 reads per million, 1 experiments
CAUUUUUUGUUCUGUUAUAGUauuacuugacccUAUUCUCAGAGUCAAAAAUAGU
...(((((((((((..((((..((....))..))))...))))).))))))....

Structure
-CAU      -     -UU    Ua  a 
    UUUUUG UUCUG   AUAG  uu c
    |||||| |||||   ||||  ||  
    AAAAAC GAGAC   UAUc  ag u
UGAU      U     UCU    cc  u 


Annotation confidence Not enough data
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Genome context
scaffold_789: 25758-25812 [+]

Database links

Mature cin-miR-4155-5p

Accession MIMAT0016759
Description Ciona intestinalis cin-miR-4155-5p mature miRNA
Sequence 1 - CAUUUUUUGUUCUGUUAUAGU - 21
Evidence experimental
Illumina [1]

Mature cin-miR-4155-3p

Accession MIMAT0016760
Description Ciona intestinalis cin-miR-4155-3p mature miRNA
Sequence 34 - UAUUCUCAGAGUCAAAAAUAGU - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39