Stem-loop cin-mir-4159

Accession

MI0015714

Description

Ciona intestinalis cin-mir-4159 precursor miRNA

Sequence

7 reads, 4.0 reads per million, 1 experiments

caguuuuacacaucguaauauuuuuguauuucaaaaaaaaauUUAAUGUGUGAAAUUGGUAG
(((((((((((((.......((((((.....))))))........)))))))))))))....

Structure

----             -cguaaua      u 
    caguuuuacacau        uuuuug a
    |||||||||||||        |||||| u
    GUUAAAGUGUGUA        aaaaac u
GAUG             AUUuaaaa      u 

Annotation confidence Not enough data

Genome context

ref|NC_020168.1|: 4817157-4817221 [-]

Mature cin-miR-4159-3p

• Accession: MIMAT0016765
• Description: Ciona intestinalis cin-miR-4159-3p mature miRNA
• Sequence: 43 - UUAAUGUGUGAAAUUGGUAG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39