Stem-loop cin-mir-4162

Accession

MI0015717

Description

Ciona intestinalis cin-mir-4162 precursor miRNA

Sequence

10 reads, 3 reads per million, 2 experiments

CUGUUGAUUCUCUUUUCUUGAUUguuauugcaAAGAAGGUAAUCAACAGCAA
(((((((((.((((((.....((((....)))))))))).)))))))))...

Structure

---         C      CUUGA    u 
   CUGUUGAUU UCUUUU     UUgu a
   ||||||||| ||||||     ||||  
   GACAACUAA GGAAGA     Aacg u
AAC         U      -----    u 

Annotation confidence Not enough data

Genome context

1q: 4523929-4523980 [-]

Mature cin-miR-4162-5p

• Accession: MIMAT0016768
• Description: Ciona intestinalis cin-miR-4162-5p mature miRNA
• Sequence: 1 - CUGUUGAUUCUCUUUUCUUGAUU - 23
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4162-3p

• Accession: MIMAT0016769
• Description: Ciona intestinalis cin-miR-4162-3p mature miRNA
• Sequence: 33 - AAGAAGGUAAUCAACAGCAA - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39